Yann GAVET
- Email gavet@mines-stetienne.fr
- Phone +33 4 77 42 01 70
- Capacity Enseignant-chercheur
- Centre Centre for Chemical Engineering -
- Department Powder Science and Technology (PMMG)
- Site Campus of Saint-Étienne
158, cours Fauriel, Saint-Étienne - Office C3-22
- Skills
image processing, linux, augmented reality
C/C++, python, matlab, OpenCL - Research Topics
Modelisation and simulation of surfaces, mosaics and textures
Voronoi diagrams are classically used to model mosaic patterns (like grains or cells). In the CorImMo 3D project (ANR TecSan 2012), the study of random fields allows us to randmly determine germs as well as distances to generate a spatial partition of the 2D or 3D space. The concepts and tools are based on:
• random fields theory (covariance function, statistical moments including the skewness and kurtosis)
• integral geometry (e.g., Minkowski functionals: area, perimeter and connectivity number for 2D fields; volume, surface area, mean breadth and connectivity number for 3D fields)
• and mathematical morphology (e.g., openings and closures, skeletons, watersheds, granulometry).
Mosaics
The corneal endothelium is constituted of non-regenerative cells. We have proposed:
• Segmentation methods based on human visual properties (Gestalt and Marr theories)
• Segmentation evaluation tool, called epsilon dissimilarity criterion, tolerant to visual and spatial variations
• 3D Reconstruction method (shape from focus), applied to corneal endothelium.
CoLIP: Color Logarithmic Image Processing
The Color Logarithmic Image Processing (CoLIP) is a recently introduced (2011) extension of the LIP mathematical framework based on abstract linear mathematics which provides a set of specific algebraic and functional operations that can be applied to the processing of color images valued in a bounded range. The CoLIP approach has been proved to be psycho-physically consistent with several laws and characteristics of the human color perception.
Successful applications have been reported on the white balance correction in color images. - Teaching Areas
Introduction to C programming, Signal Processing (L3)
Introduction to image processing (M1), advanced image processing (M2), High Performance Computing (openmp, openCL).
Taught in French and/or English - Biography
His research is at the crossroad of mathematics (for the scientific background), physics (for the image formation rules), computer engineering (for testing and constructing the practical solutions) and the application fields.
- Education
Engineer, 2001
Master thesis in image processing, 2004
PhD thesis in image processing, 2008
Habilitation 2015 - Career History
Assistant Professor
Leader of the CorImMo3D project (ANR 2012, 650 K€)4 months (2017) detachment in Thalès-Angénieux, Saint-Heand, France.
formerly: IT developer for CNES (Space French Agency)
Contact
Domains
- Engineering Sciences [physics]/Chemical and Process Engineering50
- Computer Science [cs]/Signal and Image Processing43
- Computer Science [cs]/Modeling and Simulation25
- Computer Science [cs]/Computer Vision and Pattern Recognition [cs.CV]24
- Engineering Sciences [physics]/Signal and Image processing23
- Physics [physics]/Mathematical Physics [math-ph]9
- Life Sciences [q-bio]/Bioengineering/Imaging4
- Engineering Sciences [physics]4
- Computer Science [cs]/Image Processing [eess.IV]3
- Computer Science [cs]3
- Computer Science [cs]/Artificial Intelligence [cs.AI]2
- Computer Science [cs]/Computational Geometry [cs.CG]2
- Computer Science [cs]/Medical Imaging2
- Computer Science [cs]/Discrete Mathematics [cs.DM]1
- Computer Science [cs]/Data Structures and Algorithms [cs.DS]1
- Computer Science [cs]/Machine Learning [cs.LG]1
- Computer Science [cs]/Neural and Evolutionary Computing [cs.NE]1
- Mathematics [math]/Probability [math.PR]1
- Physics [physics]/Mechanics [physics]/Biomechanics [physics.med-ph]1
- Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC]1
- Life Sciences [q-bio]/Human health and pathology/Sensory Organs1
- Engineering Sciences [physics]/Materials1
- Engineering Sciences [physics]/Mechanics [physics.med-ph]/Biomechanics [physics.med-ph]1
- Statistics [stat]/Machine Learning [stat.ML]1
Keywords
- Dropwise condensation9
- Image processing6
- Human corneal endothelium4
- Image analysis4
- CoLIP3
- Corneal endothelium3
- Dissimilarity criterion3
- Ellipsoidal droplets3
- Granulometry3
- Modeling3
- Numerical simulation3
- Textured surfaces3
- Analytical models2
- Chromaticity diagram2
- Color Logarithmic Image Processing2
- Color logarithmic image processing2
- Convolutional Neural Networks CNN2
- Cornea endothelium2
- Deep Learning2
- Digital twins2
- Donor corneas2
- Endothelial cell density2
- Endothelial cell density ECD2
- Focus measurement2
- Human retina2
- Human visual perception2
- Image registration2
- Image segmentation2
- Image-analysis2
- Morphometry2
- Méthode de Bland Altman2
- Quality control2
- SOEC2
- SOFC2
- Spatial distribution2
- Specular microscope2
- Textured surface2
- Time-Series Classification TSC2
- X-ray tomography2
- 3D analysis1
- 3D microstructure model1
- 3D microstructuring1
- Abstract linear space1
- Aggregates1
- Algebraic framework1
- Algorithm1
- Algorithme de segmentation1
- Analyse d'image1
- Application example1
- Area density1
- Autofocusing1
- Automated delineation of cell boundaries1
- Bag of features BoF1
- Border methods1
- CORNEAL ENDOTHELIUM1
- Cell Segmentation1
- Cell count1
- Cell count strategies1
- Cell density1
- Cell detection1
- Cell morphology1
- Cell-centre method1
- Cell-density1
- Cellules hexagonales1
- Center methods1
- Coefficient de variation de surface cellulaire CV1
- Coefficient of variation CV1
- Contact1
- Contour closure1
- Contour-region duality1
- Cornea1
- Corneal Endothelium1
- Corneal endothelial cells1
- Corneal endothelial mosaic1
- Corneal organ culture1
- Corneal storage1
- Corneal transplantation1
- Cornées1
- Critère de dissimilarité1
- Curvature Analysis Method1
- DENSITY1
- Dense transformation1
- Densité cellulaire endothéliale1
- Densité cellulaire endothéliale DCE1
- Diabetic Retinopathy1
- Diffraction Laser1
- Digital1
- Dissimilarity criteria1
- Distances1
- Distribution des tailles des particules1
- Drop-size distribution function1
- Droplets Recognition1
- Dropwise Condensation1
- Détection des centres cellulaires1
- Détection des contours1
- ECD1
- EDF1
- Edge Completion1
- Eigenvalues decomposition1
- Electrode design1
Authors
Gavet Yann61
Pinoli Jean-Charles20
Debayle Johan17
Boroomandi Barati Solmaz11
Valette Stéphane11
Pinoli Jean-Charles11
Thuret Gilles9
Gain Philippe9
Deb-Joardar Nilanjana8
Thuret Gilles8
Gain Phillipe6
Acquart Sophie5
Moussaoui Hamza5
Zhao Min5
Fernandes Mathieu5
Peoc'H Michel4
Cloetens Peter4
Laurencin Jérôme4
Delette Gérard4
Bernard Aurelien4
Bottenmuller Antoine3
Dumollard Jean-Marc3
Garraud Olivier3
Nguyen Frédéric3
Pionnier Nicolas3
Théodon Léo3
Frances Christine3
Maugery Jean3
Rannou Klervi3
He Zhiguo3
Defreyn Alexandre2
Gauthier Anne-Sophie2
Hatami Nima2
Hélène Martin2
Tobón Vélez Daniel2
Hubert Maxime2
Hui Zhao2
Ahmad Ola Suleiman2
Klossa Jacques2
Fernandes Mathieu2
Tourbin Mallorie2
Hor Guillaume2
Caroline Urrea1
Caunes Andrew1
Chavarin Patricia1
Crozier Thomas1
Dussy Lachaud Eloi1
Egelhoffer Harald1
El Amri Hatem1
Gain Philippe1
Garcin Anne-Frédérique1
Germain Natacha1
Hamieh Ali1
Hanielle Vaitinadapoulle1
Hubert Maxime1
Jumelle Clothile1
Le Bihan Tristan1
Manissolle Chloé1
Manoli Pierre1
Martin Helene1
Mascarelli Frederic1
Maugery J.1
Millot Luc1
Moussa Olfa Ben1
Pataia Giacomo1
Penaud-Polge Valentin1
Peoch Michel1
Pereira S.1
Piselli Simone1
Rabiet Victor1
Robert Pierre-Yves1
Ronin Caroline1
Sharma R.K.1
Sharma Rakesh1
Theilliere C.1
Thibaud Garcin1
Thomas Justin1
Yäel Glasson1
Hatami Nima1
Etienne Samuel1
Coufort-Saudejaud Carole1
Fischer Marc1
Guerrero Patricio1
Martin Sylvain1
Favergeon Loïc1
Geringer Jean1
Estour Bruno1
Gouinaud Hélène1
Laurencin Jean-Paul1
Naigeon Nicolas1
Crouzet Emmanuel1
Journals
- Journal Français d'Ophtalmologie4
- Innovation and Research in BioMedical engineering3
- British Journal of Ophthalmology2
- Investigative Ophthalmology & Visual Science2
- Image Analysis & Stereology1
- American Journal of Ophthalmology1
- Applied Thermal Engineering1
- International Journal of Biomedical Imaging1
- Cell and Tissue Banking1
- Chemical Engineering Science1
- Computational Materials Science1
- Pattern Analysis and Applications1
- International Journal of Thermal Sciences1
- Journal of Mathematical Imaging and Vision1
- Journal of Microscopy1
- Journal of Power Sources1
- Machine Vision and Applications1
- Medical Image Analysis1
- Powder Technology1
- Proceedings of SPIE, the International Society for Optical Engineering1
- Journal of Electronic Imaging1
- International Journal of Mathematical Models and Methods in Applied Sciences1
- International Journal of Circuits, Systems and Signal Processing1
- ***1
Year of production
Institutions
- Université Jean Monnet - Saint-Étienne32
- Institut National de la Santé et de la Recherche Médicale26
- CIS25
- Ecole Nationale Supérieure des Mines de St Etienne25
- Centre Hospitalier Universitaire de Saint-Etienne [CHU Saint-Etienne]14
- École Centrale de Lyon9
- École Nationale des Travaux Publics de l'État9
- Ecole Nationale d'Ingénieurs de Saint Etienne9
- SPIN9
- Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche6
- Université Claude Bernard Lyon 15
- Commissariat à l'énergie atomique et aux énergies alternatives5
- Université Savoie Mont Blanc5
- European Synchrotron Radiation Facility4
- EFS4
- Université Toulouse III - Paul Sabatier3
- Université Grenoble Alpes [2016-2019]3
- Institut National Polytechnique (Toulouse)3
- Laboratory of Functional Materials, School of Chemistry and Materials Science2
- Université de Limoges2
- Institut National des Sciences Appliquées - Toulouse1
- Institut National des Sciences Appliquées de Lyon1
- Ecole Nationale Supérieure de Céramique Industrielle1
- Ministère de la santé1
- Génomique, Environnement, Immunité, Santé, Thérapeutique1
- Etablissement Français du Sang1
- Institut de Chimie - CNRS Chimie1
- Tribvn1
- Cytoo SA1
- Trybvn1
- Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement1
Laboratories
- Laboratoire Georges Friedel40
- Centre Sciences des Processus Industriels et Naturels38
- Centre Ingénierie et Santé25
- Laboratoire des Procédés en Milieux Granulaires20
- Département Imagerie et Morphologie13
- Service d’Ophtalmologie [CHU Saint-Etienne]13
- Biologie, Ingénierie et Imagerie pour l'Ophtalmologie12
- Département PROcédés Poudres, Interfaces, Cristallisation et Ecoulements9
- Laboratoire de Tribologie et Dynamique des Systèmes9
- Département Imagerie et Statistiques7
- Institut Universitaire de France6
- Surfaces et Tissus Biologiques5
- Laboratoire d'Innovation pour les Technologies des Energies Nouvelles et les nanomatériaux5
- Etablissement Français du Sang4
- Institut de biologie et chimie des protéines [Lyon]4
- Laboratoire de Génie Chimique3
- Department of Pathology3
- Laboratory of Functional Materials, School of Chemistry and Materials Science2
- Groupe Immunité des Muqueuses et Agents Pathogènes2
- Département de pathologie2
- Service de neuropathologie2
- Toulouse Biotechnology Institute1
- Science des Procédés Céramiques et de Traitements de Surface1
- Etablissement Français du Sang1
- Service d'Endocrinologie de l'adulte1
- Centre de Recherche en Acquisition et Traitement de l'Image pour la Santé1
- Tribvn1
- Etablissement français du sang, Auvergne-Loire [Saint-Etienne]1
- CEA Le Ripault1
- Auvergne-Loire Regional Blood Bank (EFS Auvergne-Loire), Saint-Etienne1
- Biologie moléculaire et cellulaire des microorganismes1
Research team
- Antoine Bottenmuller, Léo Théodon, Johan Debayle, Christine Frances, Yann Gavet, et al.. Morphological characterization of compact aggregates using image analysis and a geometrical stochastic 3D model. ICPRS 13th International Conference on Pattern Recognition Systems, espol - Escuela superior Politécnica del Litoral, Jul 2023, Guayaquil, Ecuador. pp.1 à 7, ⟨10.1109/ICPRS58416.2023.10179036⟩. ⟨emse-04169754⟩
- Antoine Bottenmuller, Léo Théodon, Johan Debayle, Daniel Tobón Vélez, Mallorie Tourbin, et al.. Granulometric Analysis of Maltodextrin Particles Observed by Scanning Electron Microscopy. ICPRS 13th International Conference on Pattern Recognition Systems, espol - Escuela superior Politécnica del Litoral, Jul 2023, Guayaquil, Ecuador. pp.1 à 7, ⟨10.1109/ICPRS58416.2023.10179067⟩. ⟨emse-04169470⟩
- Antoine Bottenmuller, Léo Théodon, Johan Debayle, Daniel Tobón Vélez, Mallorie Tourbin, et al.. Une approche pour l’analyse granulométrique de particules condensées sur des images en niveaux de gris. GRETSI 2023 - 29ème Colloque Francophone du Traitement du Signal et des Images, Aug 2023, Grenoble, France. pp.2023-1378 / 1153 à 1156. ⟨emse-04195651⟩
- Gilles Thuret, Zhiguo He, Vaitinadapoulle Hanielle, Hatem El Amri, Olfa Ben Moussa, et al.. Birth and death simulation of human corneal endothelium cells. ECSIA'2021 : The 13th European Congress for Stereology and Image Analysis, Mines Saint-Etienne - Institut Mines Telecom (IMT), Jun 2021, Saint-Etienne, France. ⟨emse-03543132⟩
- Eloi Dussy Lachaud, Andrew Caunes, Gilles Thuret, Yann Gavet. Digital twins of human corneal endothelium from generative adversarial networks. Fifteenth International Conference on Quality Control by Artificial Vision (QCAV 2021), May 2021, Tokushima, Japan. pp.117940L, ⟨10.1117/12.2586772⟩. ⟨emse-03596379⟩
- Valentin Penaud-Polge, Yann Gavet. Robustness Study of Edge Segmentation and Completion by CNN Based Method for Tessellation Images. ISIVC'2020: The 10th International Symposium on Signal, Image, Video and Communications, Mines Saint-Etienne, Apr 2021, Saint-Etienne, France. pp.9487553, ⟨10.1109/ISIVC49222.2021.9487553⟩. ⟨emse-03284617⟩
- Marc Fischer, Sylvain Martin, Yann Gavet, Loïc Favergeon. Modelling of nucleation – Isotropic surface growth for finite platelet-like particles. Chemical Engineering Science, 2021, 245, pp.116893. ⟨10.1016/j.ces.2021.116893⟩. ⟨emse-03551625⟩
- Thomas Crozier, Yann Gavet. Vector fields color constancy correction within the CoLIP framework. ECSIA'2021 : The 13th European Congress for Stereology and Image Analysis, Mines Saint-Etienne - Institut Mines Telecom (IMT), Jun 2021, Saint-Etienne, France. ⟨emse-03545917⟩
- Hamza Moussaoui, Johan Debayle, Yann Gavet, Peter Cloetens, Jérôme Laurencin. Particle-based model for functional and diffusion layers of solid oxide cells electrodes. Powder Technology, 2020, 367, pp.67 à 81. ⟨10.1016/j.powtec.2020.03.040⟩. ⟨hal-02520003⟩
- Solmaz Boroomandi Barati, Martin Hélène, Jean-Charles Pinoli, Stéphane Valette, Yann Gavet. Binarization of the gray scale images of droplets during dropwise condensation on textured surfaces. QCAV 2019 - Quality Control by Artificial Vision, Institute IRIMAS de l' Université de Haute-Alsace (UHA), May 2019, Mulhouse, France. pp.111720R, ⟨10.1117/12.2521447⟩. ⟨hal-02294810⟩